J3_4V8J_002

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_002 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.0827

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

4V8J|1|AA|C|913
4V8J|1|AA|A|914
4V8J|1|AA|A|915
4V8J|1|AA|G|916
*
4V8J|1|AA|C|1325
4V8J|1|AA|U|1326
4V8J|1|AA|A|1327
4V8J|1|AA|G|1328
4V8J|1|AA|U|1329
4V8J|1|AA|A|1330
4V8J|1|AA|A|1331
*
4V8J|1|AA|U|1354
4V8J|1|AA|G|1355
4V8J|1|AA|A|1356
4V8J|1|AA|A|1357
4V8J|1|AA|U|1358
4V8J|1|AA|A|1359
4V8J|1|AA|C|1360
4V8J|1|AA|G|1361

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AW

Transfer RNA; tRNA