J3_4V8J_013

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_013 not in the Motif Atlas

Homologous match to J3_7RQB_010

Geometric discrepancy: 0.1038

The information below is about J3_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.3

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

4V8J|1|BA|U|2091
4V8J|1|BA|U|2092
4V8J|1|BA|G|2093
*
4V8J|1|BA|C|2196
4V8J|1|BA|U|2197
4V8J|1|BA|A|2198
4V8J|1|BA|A|2199
4V8J|1|BA|C|2200
*
4V8J|1|BA|G|2223
4V8J|1|BA|G|2224
4V8J|1|BA|A|2225
4V8J|1|BA|C|2226
4V8J|1|BA|A|2227
4V8J|1|BA|G|2228

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B1

50S ribosomal protein L28

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9