J3_4V8J_060

3D structure

PDB id

4V8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G347U.

Experimental method

X-RAY DIFFRACTION

Resolution

3.9 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V8J|1|DA|U|504, 4V8J|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8J_060 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2466

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V8J|1|DA|G|30
4V8J|1|DA|C|31
*
4V8J|1|DA|G|474
4V8J|1|DA|U|475
4V8J|1|DA|G|476
4V8J|1|DA|A|477
4V8J|1|DA|A|478
4V8J|1|DA|A|479
4V8J|1|DA|A|480
4V8J|1|DA|G|481
4V8J|1|DA|A|482
4V8J|1|DA|A|483
4V8J|1|DA|C|484
*
4V8J|1|DA|G|496
4V8J|1|DA|A|497
4V8J|1|DA|G|498
4V8J|1|DA|U|499
4V8J|1|DA|G|500
4V8J|1|DA|A|501
4V8J|1|DA|A|502
4V8J|1|DA|A|503
4V8J|1|DA|U|504
4V8J|1|DA|A|505
4V8J|1|DA|G|506
4V8J|1|DA|A|507
4V8J|1|DA|G|508
4V8J|1|DA|C|509
4V8J|1|DA|C|510

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L20

Chain DW

50S ribosomal protein L22

Chain DY

50S ribosomal protein L24