J3_4V8N_017

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V8N|1|CA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_017 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0853

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V8N|1|CA|C|826
4V8N|1|CA|U|827
4V8N|1|CA|A|828
4V8N|1|CA|G|829
*
4V8N|1|CA|C|857
4V8N|1|CA|G|858
4V8N|1|CA|A|859
4V8N|1|CA|A|860
4V8N|1|CA|G|861
*
4V8N|1|CA|C|868
4V8N|1|CA|G|869
4V8N|1|CA|U|870
4V8N|1|CA|U|871
4V8N|1|CA|A|872
4V8N|1|CA|A|873
4V8N|1|CA|G|874

Current chains

Chain CA

16S RRNA

Nearby chains

Chain CB

30S RIBOSOMAL PROTEIN S2

Chain CH

30S RIBOSOMAL PROTEIN S8