J3_4V8N_031

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V8N|1|DA|A|2518, 4V8N|1|DA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_031 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1133

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V8N|1|DA|C|2517
4V8N|1|DA|A|2518
4V8N|1|DA|U|2519
4V8N|1|DA|C|2520
*
4V8N|1|DA|G|2545
4V8N|1|DA|U|2546
4V8N|1|DA|U|2547
*
4V8N|1|DA|A|2561
4V8N|1|DA|U|2562
4V8N|1|DA|U|2563
4V8N|1|DA|A|2564
4V8N|1|DA|A|2565
4V8N|1|DA|A|2566
4V8N|1|DA|G|2567

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain DN

50S RIBOSOMAL PROTEIN L13

Chain DO

50S RIBOSOMAL PROTEIN L14