J3_4V8N_054

3D structure

PDB id

4V8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of agmatidine tRNA-Ile2 bound to the 70S ribosome in the A and P site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

4V8N|1|BA|G|2833, 4V8N|1|BA|A|2835

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8N_054 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.1122

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V8N|1|BA|C|2814
4V8N|1|BA|C|2815
*
4V8N|1|BA|G|2831
4V8N|1|BA|U|2832
4V8N|1|BA|G|2833
4V8N|1|BA|G|2834
4V8N|1|BA|A|2835
4V8N|1|BA|U|2836
*
4V8N|1|BA|A|2882
4V8N|1|BA|A|2883
4V8N|1|BA|U|2884
4V8N|1|BA|C|2885
4V8N|1|BA|G|2886

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain B5

50S RIBOSOMAL PROTEIN L32

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BR

50S RIBOSOMAL PROTEIN L17