J3_4V8P_010
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UUUG*CUUAU*AGACAUG
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_010 not in the Motif Atlas
- Geometric match to J3_4V9F_007
- Geometric discrepancy: 0.1947
- The information below is about J3_4V9F_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_97609.1
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4V8P|1|A1|U|2427
4V8P|1|A1|U|2428
4V8P|1|A1|U|2429
4V8P|1|A1|G|2430
*
4V8P|1|A1|C|2507
4V8P|1|A1|U|2508
4V8P|1|A1|U|2509
4V8P|1|A1|A|2510
4V8P|1|A1|U|2511
*
4V8P|1|A1|A|2580
4V8P|1|A1|G|2581
4V8P|1|A1|A|2582
4V8P|1|A1|C|2583
4V8P|1|A1|A|2584
4V8P|1|A1|U|2585
4V8P|1|A1|G|2586
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AQ
- 60S RIBOSOMAL PROTEIN L36
- Chain BA
- RPL8
- Chain BF
- RPL7A
- Chain BL
- RIBOSOMAL PROTEIN L15
Coloring options: