J3_4V8P_020

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

UAG*CGUAG*UCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8P_020 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.1541

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8P|1|D1|U|854
4V8P|1|D1|A|855
4V8P|1|D1|G|856
*
4V8P|1|D1|C|888
4V8P|1|D1|G|889
4V8P|1|D1|U|890
4V8P|1|D1|A|891
4V8P|1|D1|G|892
*
4V8P|1|D1|U|917
4V8P|1|D1|C|918
4V8P|1|D1|A|919
4V8P|1|D1|A|920

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CA

RPL8

Chain CO

RPL19

Chain DL

RPL34