J3_4V8P_041

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

4V8P|1|F1|A|2692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8P_041 not in the Motif Atlas

Homologous match to J3_8C3A_010

Geometric discrepancy: 0.1069

The information below is about J3_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V8P|1|F1|C|2653
4V8P|1|F1|U|2654
4V8P|1|F1|C|2655
*
4V8P|1|F1|G|2679
4V8P|1|F1|A|2680
4V8P|1|F1|A|2681
*
4V8P|1|F1|U|2690
4V8P|1|F1|A|2691
4V8P|1|F1|A|2692
4V8P|1|F1|A|2693
4V8P|1|F1|A|2694
4V8P|1|F1|G|2695

Current chains

Chain F1

26S RRNA

Nearby chains

Chain E3

5S ribosomal RNA; 5S rRNA

Chain ED

60S RIBOSOMAL PROTEIN L11

Chain EM

60S RIBOSOMAL PROTEIN L5

Chain EP

60S RIBOSOMAL PROTEIN L21