J3_4V8P_042
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- UAUC*GUC*GCUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 4V8P|1|F1|A|2875, 4V8P|1|F1|U|2876
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_042 not in the Motif Atlas
- Homologous match to J3_8P9A_063
- Geometric discrepancy: 0.1004
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_62630.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|F1|U|2874
4V8P|1|F1|A|2875
4V8P|1|F1|U|2876
4V8P|1|F1|C|2877
*
4V8P|1|F1|G|2902
4V8P|1|F1|U|2903
4V8P|1|F1|C|2904
*
4V8P|1|F1|G|2918
4V8P|1|F1|C|2919
4V8P|1|F1|U|2920
4V8P|1|F1|A|2921
4V8P|1|F1|A|2922
4V8P|1|F1|U|2923
4V8P|1|F1|A|2924
Current chains
- Chain F1
- 26S RRNA
Nearby chains
- Chain EB
- RIBOSOMAL PROTEIN L3
- Chain EJ
- RPL23
Coloring options: