J3_4V8P_044
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CAAAGUGAAAA*UAAUCUAAAG*CAAAG
- Length
- 26 nucleotides
- Bulged bases
- 4V8P|1|H1|A|118, 4V8P|1|H1|A|119, 4V8P|1|H1|A|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_044 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.3669
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V8P|1|H1|C|111
4V8P|1|H1|A|112
4V8P|1|H1|A|113
4V8P|1|H1|A|114
4V8P|1|H1|G|115
4V8P|1|H1|U|116
4V8P|1|H1|G|117
4V8P|1|H1|A|118
4V8P|1|H1|A|119
4V8P|1|H1|A|120
4V8P|1|H1|A|121
*
4V8P|1|H1|U|149
4V8P|1|H1|A|150
4V8P|1|H1|A|151
4V8P|1|H1|U|152
4V8P|1|H1|C|153
4V8P|1|H1|U|154
4V8P|1|H1|A|155
4V8P|1|H1|A|156
4V8P|1|H1|A|157
4V8P|1|H1|G|158
*
4V8P|1|H1|C|262
4V8P|1|H1|A|263
4V8P|1|H1|A|264
4V8P|1|H1|A|265
4V8P|1|H1|G|266
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain GF
- RPL7A
- Chain GL
- RIBOSOMAL PROTEIN L15
- Chain GU
- RPL35
- Chain HQ
- 60S RIBOSOMAL PROTEIN L36
- Chain HU
- RPL13
Coloring options: