J3_4V8P_055
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V8P|1|H1|A|2692
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_055 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1094
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8P|1|H1|C|2653
4V8P|1|H1|U|2654
4V8P|1|H1|C|2655
*
4V8P|1|H1|G|2679
4V8P|1|H1|A|2680
4V8P|1|H1|A|2681
*
4V8P|1|H1|U|2690
4V8P|1|H1|A|2691
4V8P|1|H1|A|2692
4V8P|1|H1|A|2693
4V8P|1|H1|A|2694
4V8P|1|H1|G|2695
Current chains
- Chain H1
- 26S RRNA
Nearby chains
- Chain G3
- 5S ribosomal RNA; 5S rRNA
- Chain GD
- 60S RIBOSOMAL PROTEIN L11
- Chain GM
- 60S RIBOSOMAL PROTEIN L5
- Chain GP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: