3D structure

PDB id
4V8P (explore in PDB, NAKB, or RNA 3D Hub)
Description
T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
Experimental method
X-RAY DIFFRACTION
Resolution
3.52 Å

Loop

Sequence
AUGAAAAG*CU*AU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8P_060 not in the Motif Atlas
Geometric match to J3_5TBW_002
Geometric discrepancy: 0.1017
The information below is about J3_5TBW_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_69021.1
Basepair signature
cWW-tWH-cWW-tSH-F-cWW-F
Number of instances in this motif group
7

Unit IDs

4V8P|1|A1|A|368
4V8P|1|A1|U|369
4V8P|1|A1|G|370
4V8P|1|A1|A|371
4V8P|1|A1|A|372
4V8P|1|A1|A|373
4V8P|1|A1|A|374
4V8P|1|A1|G|375
*
4V8P|1|A1|C|400
4V8P|1|A1|U|401
*
4V8P|1|B2|A|22
4V8P|1|B2|U|23

Current chains

Chain A1
26S RRNA
Chain B2
5.8S RRNA

Nearby chains

Chain AB
RPL39
Chain BC
RPL4
Chain BS
RPL26

Coloring options:


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