J3_4V8P_061
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- AUGAAAAGAAC*GGGCUAAAAGACU*AU
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_061 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.1946
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V8P|1|A1|A|368
4V8P|1|A1|U|369
4V8P|1|A1|G|370
4V8P|1|A1|A|371
4V8P|1|A1|A|372
4V8P|1|A1|A|373
4V8P|1|A1|A|374
4V8P|1|A1|G|375
4V8P|1|A1|A|376
4V8P|1|A1|A|377
4V8P|1|A1|C|378
*
4V8P|1|A1|G|389
4V8P|1|A1|G|390
4V8P|1|A1|G|391
4V8P|1|A1|C|392
4V8P|1|A1|U|393
4V8P|1|A1|A|394
4V8P|1|A1|A|395
4V8P|1|A1|A|396
4V8P|1|A1|A|397
4V8P|1|A1|G|398
4V8P|1|A1|A|399
4V8P|1|A1|C|400
4V8P|1|A1|U|401
*
4V8P|1|B2|A|22
4V8P|1|B2|U|23
Current chains
- Chain A1
- 26S RRNA
- Chain B2
- 5.8S RRNA
Nearby chains
- Chain AB
- RPL39
- Chain BC
- RPL4
- Chain BQ
- RPL17
- Chain BS
- RPL26
Coloring options: