J3_4V8P_065
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 4V8P|1|A1|C|2749, 4V8P|1|A1|U|2785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_065 not in the Motif Atlas
- Homologous match to J3_8C3A_056
- Geometric discrepancy: 0.0775
- The information below is about J3_8C3A_056
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_27903.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
4V8P|1|A1|G|2640
4V8P|1|A1|U|2641
4V8P|1|A1|C|2642
*
4V8P|1|A1|G|2743
4V8P|1|A1|C|2744
4V8P|1|A1|C|2745
4V8P|1|A1|U|2746
4V8P|1|A1|A|2747
4V8P|1|A1|U|2748
4V8P|1|A1|C|2749
4V8P|1|A1|G|2750
4V8P|1|A1|A|2751
4V8P|1|A1|U|2752
4V8P|1|A1|C|2753
4V8P|1|A1|C|2754
*
4V8P|1|A1|G|2781
4V8P|1|A1|G|2782
4V8P|1|A1|U|2783
4V8P|1|A1|G|2784
4V8P|1|A1|U|2785
4V8P|1|A1|C|2786
Current chains
- Chain A1
- 26S RRNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L36A
- Chain BK
- 60S RIBOSOMAL PROTEIN L27A
- Chain BN
- RPL18
- Chain BP
- 60S RIBOSOMAL PROTEIN L21
Coloring options: