J3_4V8P_079

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8P_079 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1104

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V8P|1|D1|A|1678
4V8P|1|D1|G|1679
4V8P|1|D1|A|1680
4V8P|1|D1|C|1681
4V8P|1|D1|G|1682
*
4V8P|1|D1|C|1817
4V8P|1|D1|C|1818
*
4V8P|1|D1|G|1822
4V8P|1|D1|A|1823
4V8P|1|D1|A|1824
4V8P|1|D1|A|1825
4V8P|1|D1|A|1826
4V8P|1|D1|U|1827

Current chains

Chain D1

26S RRNA

Nearby chains

Chain CA

RPL8

Chain CY

RPL37A

Chain DL

RPL34