J3_4V8P_083

3D structure

PDB id

4V8P (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophila 60S ribosomal subunit in complex with initiation factor 6.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

AU*AUGAAAAG*CU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8P_083 not in the Motif Atlas

Geometric match to J3_8C3A_048

Geometric discrepancy: 0.0973

The information below is about J3_8C3A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69021.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

7

Unit IDs

4V8P|1|E2|A|22
4V8P|1|E2|U|23
*
4V8P|1|F1|A|368
4V8P|1|F1|U|369
4V8P|1|F1|G|370
4V8P|1|F1|A|371
4V8P|1|F1|A|372
4V8P|1|F1|A|373
4V8P|1|F1|A|374
4V8P|1|F1|G|375
*
4V8P|1|F1|C|400
4V8P|1|F1|U|401

Current chains

Chain E2

5.8S RRNA

Chain F1

26S RRNA

Nearby chains

Chain EC

RPL4

Chain EQ

RPL17

Chain ES

RPL26

Chain FB

RPL39