J3_4V8P_087
3D structure
- PDB id
- 4V8P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T.thermophila 60S ribosomal subunit in complex with initiation factor 6.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.52 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 4V8P|1|E3|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8P_087 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1038
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12003.2
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8P|1|E3|C|9
4V8P|1|E3|C|10
4V8P|1|E3|A|11
4V8P|1|E3|U|12
4V8P|1|E3|A|13
4V8P|1|E3|C|14
*
4V8P|1|E3|G|65
4V8P|1|E3|G|66
*
4V8P|1|E3|U|109
4V8P|1|E3|G|110
Current chains
- Chain E3
- 5S RRNA
Nearby chains
- Chain ED
- 60S RIBOSOMAL PROTEIN L11
- Chain EH
- 60S RIBOSOMAL PROTEIN L10
- Chain EM
- 60S RIBOSOMAL PROTEIN L5
- Chain EP
- 60S RIBOSOMAL PROTEIN L21
- Chain F1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: