J3_4V8Q_009

3D structure

PDB id

4V8Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V8Q|1|BA|U|871, 4V8Q|1|BA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Q_009 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0934

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V8Q|1|BA|C|826
4V8Q|1|BA|U|827
4V8Q|1|BA|A|828
4V8Q|1|BA|G|829
*
4V8Q|1|BA|C|857
4V8Q|1|BA|G|858
4V8Q|1|BA|A|859
4V8Q|1|BA|A|860
4V8Q|1|BA|G|861
*
4V8Q|1|BA|C|868
4V8Q|1|BA|G|869
4V8Q|1|BA|U|870
4V8Q|1|BA|U|871
4V8Q|1|BA|A|872
4V8Q|1|BA|A|873
4V8Q|1|BA|G|874

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BB

30S RIBOSOMAL PROTEIN S2

Chain BH

30S RIBOSOMAL PROTEIN S8