J3_4V8Q_028
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- GCCUAAG*UAGGAAUCU*AGC
- Length
- 19 nucleotides
- Bulged bases
- 4V8Q|1|BA|C|48, 4V8Q|1|BA|A|50, 4V8Q|1|BA|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_028 not in the Motif Atlas
- Homologous match to J3_4LFB_014
- Geometric discrepancy: 0.0686
- The information below is about J3_4LFB_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V8Q|1|BA|G|46
4V8Q|1|BA|C|47
4V8Q|1|BA|C|48
4V8Q|1|BA|U|49
4V8Q|1|BA|A|50
4V8Q|1|BA|A|51
4V8Q|1|BA|G|52
*
4V8Q|1|BA|U|359
4V8Q|1|BA|A|360
4V8Q|1|BA|G|361
4V8Q|1|BA|G|362
4V8Q|1|BA|A|363
4V8Q|1|BA|A|364
4V8Q|1|BA|U|365
4V8Q|1|BA|C|366
4V8Q|1|BA|U|367
*
4V8Q|1|BA|A|393
4V8Q|1|BA|G|394
4V8Q|1|BA|C|395
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BL
- 30S RIBOSOMAL PROTEIN S12
- Chain BP
- 30S RIBOSOMAL PROTEIN S16
- Chain BY
- Transfer-messenger RNA; tmRNA; 10Sa RNA; SsrA
- Chain BZ
- ELONGATION FACTOR TU
Coloring options: