J3_4V8Q_030
3D structure
- PDB id
- 4V8Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUAGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Q_030 not in the Motif Atlas
- Homologous match to J3_4LFB_015
- Geometric discrepancy: 0.0647
- The information below is about J3_4LFB_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.4
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V8Q|1|BA|C|586
4V8Q|1|BA|G|587
4V8Q|1|BA|G|588
*
4V8Q|1|BA|C|651
4V8Q|1|BA|U|652
4V8Q|1|BA|A|653
4V8Q|1|BA|G|654
4V8Q|1|BA|A|655
*
4V8Q|1|BA|U|751
4V8Q|1|BA|G|752
4V8Q|1|BA|A|753
4V8Q|1|BA|C|754
4V8Q|1|BA|G|755
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BH
- 30S RIBOSOMAL PROTEIN S8
- Chain BL
- 30S RIBOSOMAL PROTEIN S12
- Chain BO
- 30S RIBOSOMAL PROTEIN S15
- Chain BQ
- 30S RIBOSOMAL PROTEIN S17
Coloring options: