J3_4V8T_001
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 4V8T|1|5|U|117, 4V8T|1|5|G|156
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_001 not in the Motif Atlas
- Homologous match to J3_8P9A_042
- Geometric discrepancy: 0.0542
- The information below is about J3_8P9A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_69230.1
- Basepair signature
- cWW-tHW-F-F-F-F-tHS-F-cWW-F-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8T|1|5|C|113
4V8T|1|5|A|114
4V8T|1|5|A|115
4V8T|1|5|A|116
4V8T|1|5|U|117
4V8T|1|5|U|118
4V8T|1|5|U|119
4V8T|1|5|G|120
4V8T|1|5|A|121
4V8T|1|5|A|122
4V8T|1|5|A|123
*
4V8T|1|5|U|149
4V8T|1|5|A|150
4V8T|1|5|A|151
4V8T|1|5|U|152
4V8T|1|5|U|153
4V8T|1|5|U|154
4V8T|1|5|G|155
4V8T|1|5|G|156
4V8T|1|5|A|157
4V8T|1|5|G|158
*
4V8T|1|5|C|263
4V8T|1|5|G|264
4V8T|1|5|A|265
4V8T|1|5|A|266
4V8T|1|5|G|267
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain G
- 60S RIBOSOMAL PROTEIN L8-A
- Chain L
- 60S RIBOSOMAL PROTEIN L13-A
- Chain N
- 60S RIBOSOMAL PROTEIN L15-A
- Chain h
- 60S RIBOSOMAL PROTEIN L35-A
- Chain i
- 60S RIBOSOMAL PROTEIN L36-A
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