J3_4V8T_003
3D structure
- PDB id
- 4V8T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.1 Å
Loop
- Sequence
- UAG*CGUAG*UCGA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8T_003 not in the Motif Atlas
- Homologous match to J3_8C3A_004
- Geometric discrepancy: 0.0977
- The information below is about J3_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44724.5
- Basepair signature
- cWW-tSH-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
4V8T|1|5|U|829
4V8T|1|5|A|830
4V8T|1|5|G|831
*
4V8T|1|5|C|863
4V8T|1|5|G|864
4V8T|1|5|U|865
4V8T|1|5|A|866
4V8T|1|5|G|867
*
4V8T|1|5|U|892
4V8T|1|5|C|893
4V8T|1|5|G|894
4V8T|1|5|A|895
Current chains
- Chain 5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L2-B
- Chain R
- 60S RIBOSOMAL PROTEIN L19-B
- Chain g
- 60S RIBOSOMAL PROTEIN L34-A
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