J3_4V8T_004

3D structure

PDB id

4V8T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the 60S Ribosomal Subunit in Complex with Arx1 and Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8T_004 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.208

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

4V8T|1|5|G|1230
4V8T|1|5|A|1231
4V8T|1|5|C|1232
*
4V8T|1|5|G|1256
4V8T|1|5|C|1257
4V8T|1|5|U|1258
4V8T|1|5|A|1259
4V8T|1|5|A|1260
4V8T|1|5|G|1261
4V8T|1|5|G|1262
*
4V8T|1|5|C|1277
4V8T|1|5|A|1278
4V8T|1|5|C|1279

Current chains

Chain 5

25S RIBOSOMAL RNA

Nearby chains

Chain K

60S RIBOSOMAL PROTEIN L12

Chain q

60S ACIDIC RIBOSOMAL PROTEIN P0