3D structure

PDB id
4V8X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of Thermus thermophilus ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.35 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
4V8X|1|BA|U|504, 4V8X|1|BA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V8X_040 not in the Motif Atlas
Homologous match to J3_4WF9_011
Geometric discrepancy: 0.233
The information below is about J3_4WF9_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

4V8X|1|BA|G|30
4V8X|1|BA|C|31
*
4V8X|1|BA|G|474
4V8X|1|BA|U|475
4V8X|1|BA|G|476
4V8X|1|BA|A|477
4V8X|1|BA|A|478
4V8X|1|BA|A|479
4V8X|1|BA|A|480
4V8X|1|BA|G|481
4V8X|1|BA|A|482
4V8X|1|BA|A|483
4V8X|1|BA|C|484
*
4V8X|1|BA|G|496
4V8X|1|BA|A|497
4V8X|1|BA|G|498
4V8X|1|BA|U|499
4V8X|1|BA|G|500
4V8X|1|BA|A|501
4V8X|1|BA|A|502
4V8X|1|BA|A|503
4V8X|1|BA|U|504
4V8X|1|BA|A|505
4V8X|1|BA|G|506
4V8X|1|BA|A|507
4V8X|1|BA|G|508
4V8X|1|BA|C|509
4V8X|1|BA|C|510

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BU
50S RIBOSOMAL PROTEIN L20
Chain BW
50S RIBOSOMAL PROTEIN L22
Chain BY
50S RIBOSOMAL PROTEIN L24

Coloring options:


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