J3_4V8Y_004

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Y_004 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.095

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V8Y|1|B2|C|1161
4V8Y|1|B2|C|1162
4V8Y|1|B2|A|1163
4V8Y|1|B2|G|1164
*
4V8Y|1|B2|C|1581
4V8Y|1|B2|U|1582
4V8Y|1|B2|A|1583
4V8Y|1|B2|G|1584
4V8Y|1|B2|U|1585
4V8Y|1|B2|A|1586
4V8Y|1|B2|A|1587
*
4V8Y|1|B2|U|1609
4V8Y|1|B2|G|1610
4V8Y|1|B2|A|1611
4V8Y|1|B2|U|1612
4V8Y|1|B2|U|1613
4V8Y|1|B2|A|1614
4V8Y|1|B2|C|1615
4V8Y|1|B2|G|1616

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A2

40S RIBOSOMAL PROTEIN S28-A

Chain AF

40S RIBOSOMAL PROTEIN S5

Chain AQ

40S RIBOSOMAL PROTEIN S16-A