J3_4V8Y_007

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

4V8Y|1|B2|A|1217, 4V8Y|1|B2|G|1445

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Y_007 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.0901

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4V8Y|1|B2|C|1215
4V8Y|1|B2|C|1216
4V8Y|1|B2|A|1217
4V8Y|1|B2|G|1218
4V8Y|1|B2|A|1219
4V8Y|1|B2|C|1220
*
4V8Y|1|B2|G|1263
4V8Y|1|B2|G|1264
4V8Y|1|B2|G|1265
4V8Y|1|B2|U|1266
4V8Y|1|B2|G|1267
*
4V8Y|1|B2|U|1442
4V8Y|1|B2|U|1443
4V8Y|1|B2|A|1444
4V8Y|1|B2|G|1445
4V8Y|1|B2|A|1446
4V8Y|1|B2|C|1447
4V8Y|1|B2|G|1448

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A3

40S RIBOSOMAL PROTEIN S29-A

Chain A5

UBIQUITIN-40S RIBOSOMAL PROTEIN S31

Chain AK

40S RIBOSOMAL PROTEIN S10-A