J3_4V8Y_017
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- AGCU*ACGUUCUAGCAUUCAAG*UGAU
- Length
- 25 nucleotides
- Bulged bases
- 4V8Y|1|B5|G|2549, 4V8Y|1|B5|U|2550, 4V8Y|1|B5|U|2551, 4V8Y|1|B5|A|2554, 4V8Y|1|B5|U|2558, 4V8Y|1|B5|U|2559, 4V8Y|1|B5|C|2560
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_017 not in the Motif Atlas
- Homologous match to J3_8P9A_060
- Geometric discrepancy: 0.1124
- The information below is about J3_8P9A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76247.1
- Basepair signature
- cWW-F-tHH-F-tHS-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B5|A|2529
4V8Y|1|B5|G|2530
4V8Y|1|B5|C|2531
4V8Y|1|B5|U|2532
*
4V8Y|1|B5|A|2547
4V8Y|1|B5|C|2548
4V8Y|1|B5|G|2549
4V8Y|1|B5|U|2550
4V8Y|1|B5|U|2551
4V8Y|1|B5|C|2552
4V8Y|1|B5|U|2553
4V8Y|1|B5|A|2554
4V8Y|1|B5|G|2555
4V8Y|1|B5|C|2556
4V8Y|1|B5|A|2557
4V8Y|1|B5|U|2558
4V8Y|1|B5|U|2559
4V8Y|1|B5|C|2560
4V8Y|1|B5|A|2561
4V8Y|1|B5|A|2562
4V8Y|1|B5|G|2563
*
4V8Y|1|B5|U|2578
4V8Y|1|B5|G|2579
4V8Y|1|B5|A|2580
4V8Y|1|B5|U|2581
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain AB
- 40S RIBOSOMAL PROTEIN S1-A
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain BG
- 60S RIBOSOMAL PROTEIN L8-A
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain BZ
- 60S RIBOSOMAL PROTEIN L27-A
- Chain Bc
- 60S RIBOSOMAL PROTEIN L30
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
Coloring options: