J3_4V8Y_018
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUC*GAA*UAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 4V8Y|1|B5|A|2703
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_018 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.0527
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8Y|1|B5|C|2664
4V8Y|1|B5|U|2665
4V8Y|1|B5|C|2666
*
4V8Y|1|B5|G|2690
4V8Y|1|B5|A|2691
4V8Y|1|B5|A|2692
*
4V8Y|1|B5|U|2701
4V8Y|1|B5|A|2702
4V8Y|1|B5|A|2703
4V8Y|1|B5|A|2704
4V8Y|1|B5|A|2705
4V8Y|1|B5|G|2706
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain A7
- SUPPRESSOR PROTEIN STM1
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BJ
- 60S RIBOSOMAL PROTEIN L11-A
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
Coloring options: