J3_4V8Y_035
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UCGAUC*GGAAU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_035 not in the Motif Atlas
- Homologous match to J3_8P9A_055
- Geometric discrepancy: 0.0659
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4V8Y|1|B5|U|1526
4V8Y|1|B5|C|1527
4V8Y|1|B5|G|1528
4V8Y|1|B5|A|1529
4V8Y|1|B5|U|1530
4V8Y|1|B5|C|1531
*
4V8Y|1|B5|G|1591
4V8Y|1|B5|G|1592
4V8Y|1|B5|A|1593
4V8Y|1|B5|A|1594
4V8Y|1|B5|U|1595
*
4V8Y|1|B5|A|1612
4V8Y|1|B5|A|1613
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
- Chain Bk
- 60S RIBOSOMAL PROTEIN L38
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: