J3_4V8Z_008
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 4V8Z|1|B2|U|1285
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_008 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.0991
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V8Z|1|B2|U|1283
4V8Z|1|B2|C|1284
4V8Z|1|B2|U|1285
4V8Z|1|B2|U|1286
4V8Z|1|B2|A|1287
4V8Z|1|B2|G|1288
*
4V8Z|1|B2|C|1327
4V8Z|1|B2|G|1328
4V8Z|1|B2|A|1329
4V8Z|1|B2|G|1330
4V8Z|1|B2|A|1331
4V8Z|1|B2|C|1332
*
4V8Z|1|B2|G|1419
4V8Z|1|B2|C|1420
4V8Z|1|B2|A|1421
4V8Z|1|B2|A|1422
4V8Z|1|B2|U|1423
4V8Z|1|B2|A|1424
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain AC
- 40S RIBOSOMAL PROTEIN S2
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AR
- 40S RIBOSOMAL PROTEIN S17-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
Coloring options: