J3_4V8Z_013

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UAG*CGUAG*UCGA

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Z_013 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.0976

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V8Z|1|B5|U|829
4V8Z|1|B5|A|830
4V8Z|1|B5|G|831
*
4V8Z|1|B5|C|863
4V8Z|1|B5|G|864
4V8Z|1|B5|U|865
4V8Z|1|B5|A|866
4V8Z|1|B5|G|867
*
4V8Z|1|B5|U|892
4V8Z|1|B5|C|893
4V8Z|1|B5|G|894
4V8Z|1|B5|A|895

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L2-B

Chain BR

60S RIBOSOMAL PROTEIN L19-B

Chain Bg

60S RIBOSOMAL PROTEIN L34-A