J3_4V8Z_016
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUUG*CUUAUU*AAGACAUU
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_016 not in the Motif Atlas
- Homologous match to J3_5TBW_012
- Geometric discrepancy: 0.0965
- The information below is about J3_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_18654.1
- Basepair signature
- cWW-F-F-tSH-tHW-F-F-F-cWW-F-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B5|A|2432
4V8Z|1|B5|U|2433
4V8Z|1|B5|U|2434
4V8Z|1|B5|G|2435
*
4V8Z|1|B5|C|2512
4V8Z|1|B5|U|2513
4V8Z|1|B5|U|2514
4V8Z|1|B5|A|2515
4V8Z|1|B5|U|2516
4V8Z|1|B5|U|2517
*
4V8Z|1|B5|A|2590
4V8Z|1|B5|A|2591
4V8Z|1|B5|G|2592
4V8Z|1|B5|A|2593
4V8Z|1|B5|C|2594
4V8Z|1|B5|A|2595
4V8Z|1|B5|U|2596
4V8Z|1|B5|U|2597
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BA
- 60S RIBOSOMAL PROTEIN L2-B
- Chain BG
- 60S RIBOSOMAL PROTEIN L8-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36-A
Coloring options: