J3_4V8Z_021

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V8Z_021 not in the Motif Atlas

Geometric match to J3_4V88_078

Geometric discrepancy: 0.0507

The information below is about J3_4V88_078

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.1

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

4V8Z|1|B2|A|41
4V8Z|1|B2|G|42
*
4V8Z|1|B2|C|433
4V8Z|1|B2|G|434
4V8Z|1|B2|C|435
4V8Z|1|B2|A|436
4V8Z|1|B2|A|437
4V8Z|1|B2|A|438
4V8Z|1|B2|U|439
*
4V8Z|1|B2|A|464
4V8Z|1|B2|G|465
4V8Z|1|B2|U|466

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AX

40S RIBOSOMAL PROTEIN S23-A

Chain CV

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2