J3_4V8Z_022
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AGAUUAAG*CGCGCAAAU*AGU
- Length
- 20 nucleotides
- Bulged bases
- 4V8Z|1|B2|A|47
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_022 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.0477
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_63856.1
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V8Z|1|B2|A|41
4V8Z|1|B2|G|42
4V8Z|1|B2|A|43
4V8Z|1|B2|U|44
4V8Z|1|B2|U|45
4V8Z|1|B2|A|46
4V8Z|1|B2|A|47
4V8Z|1|B2|G|48
*
4V8Z|1|B2|C|431
4V8Z|1|B2|G|432
4V8Z|1|B2|C|433
4V8Z|1|B2|G|434
4V8Z|1|B2|C|435
4V8Z|1|B2|A|436
4V8Z|1|B2|A|437
4V8Z|1|B2|A|438
4V8Z|1|B2|U|439
*
4V8Z|1|B2|A|464
4V8Z|1|B2|G|465
4V8Z|1|B2|U|466
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AJ
- 40S RIBOSOMAL PROTEIN S9-A
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
- Chain CV
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2
Coloring options: