J3_4V8Z_032
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|398, 4V8Z|1|B5|A|402
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_032 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.034
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
4V8Z|1|B5|A|369
4V8Z|1|B5|U|370
4V8Z|1|B5|G|371
4V8Z|1|B5|A|372
4V8Z|1|B5|A|373
4V8Z|1|B5|A|374
4V8Z|1|B5|A|375
4V8Z|1|B5|G|376
4V8Z|1|B5|A|377
4V8Z|1|B5|A|378
4V8Z|1|B5|C|379
*
4V8Z|1|B5|G|390
4V8Z|1|B5|A|391
4V8Z|1|B5|G|392
4V8Z|1|B5|U|393
4V8Z|1|B5|G|394
4V8Z|1|B5|A|395
4V8Z|1|B5|A|396
4V8Z|1|B5|A|397
4V8Z|1|B5|A|398
4V8Z|1|B5|A|399
4V8Z|1|B5|G|400
4V8Z|1|B5|U|401
4V8Z|1|B5|A|402
4V8Z|1|B5|C|403
4V8Z|1|B5|G|404
*
4V8Z|1|B8|C|19
4V8Z|1|B8|U|20
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BP
- 60S RIBOSOMAL PROTEIN L17-A
- Chain BY
- 60S RIBOSOMAL PROTEIN L26-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: