J3_4V8Z_033
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|607
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_033 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0381
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B5|U|502
4V8Z|1|B5|C|503
*
4V8Z|1|B5|G|588
4V8Z|1|B5|A|589
4V8Z|1|B5|G|590
4V8Z|1|B5|G|591
4V8Z|1|B5|A|592
4V8Z|1|B5|C|593
4V8Z|1|B5|U|594
4V8Z|1|B5|G|595
4V8Z|1|B5|C|596
4V8Z|1|B5|G|597
*
4V8Z|1|B5|C|606
4V8Z|1|B5|A|607
4V8Z|1|B5|A|608
4V8Z|1|B5|G|609
4V8Z|1|B5|G|610
4V8Z|1|B5|A|611
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BE
- 60S RIBOSOMAL PROTEIN L6-A
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
Coloring options: