J3_4V8Z_041
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CCAUAU*AG*UG
- Length
- 10 nucleotides
- Bulged bases
- 4V8Z|1|B7|U|12
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_041 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.072
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V8Z|1|B7|C|9
4V8Z|1|B7|C|10
4V8Z|1|B7|A|11
4V8Z|1|B7|U|12
4V8Z|1|B7|A|13
4V8Z|1|B7|U|14
*
4V8Z|1|B7|A|66
4V8Z|1|B7|G|67
*
4V8Z|1|B7|U|111
4V8Z|1|B7|G|112
Current chains
- Chain B7
- 5S RIBOSOMAL RNA
Nearby chains
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain BD
- 60S RIBOSOMAL PROTEIN L5
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
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