J3_4V8Z_042
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 4V8Z|1|B8|U|60, 4V8Z|1|B8|C|62
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Z_042 not in the Motif Atlas
- Homologous match to J3_8P9A_067
- Geometric discrepancy: 0.0595
- The information below is about J3_8P9A_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.1
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
4V8Z|1|B8|A|44
4V8Z|1|B8|C|45
*
4V8Z|1|B8|G|58
4V8Z|1|B8|A|59
4V8Z|1|B8|U|60
4V8Z|1|B8|A|61
4V8Z|1|B8|C|62
4V8Z|1|B8|G|63
4V8Z|1|B8|U|64
*
4V8Z|1|B8|A|96
4V8Z|1|B8|A|97
4V8Z|1|B8|U|98
4V8Z|1|B8|C|99
4V8Z|1|B8|U|100
Current chains
- Chain B8
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bh
- 60S RIBOSOMAL PROTEIN L35-B
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
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