J3_4V90_001

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

4V90|1|AA|U|871, 4V90|1|AA|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_001 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0622

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

4V90|1|AA|C|826
4V90|1|AA|U|827
4V90|1|AA|A|828
4V90|1|AA|G|829
*
4V90|1|AA|C|857
4V90|1|AA|G|858
4V90|1|AA|A|859
4V90|1|AA|A|860
4V90|1|AA|G|861
*
4V90|1|AA|C|868
4V90|1|AA|G|869
4V90|1|AA|U|870
4V90|1|AA|U|871
4V90|1|AA|A|872
4V90|1|AA|A|873
4V90|1|AA|G|874

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AB

30S RIBOSOMAL PROTEIN S2

Chain AH

30S RIBOSOMAL PROTEIN S8