J3_4V90_025

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V90|1|BA|U|504, 4V90|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_025 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2146

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V90|1|BA|G|30
4V90|1|BA|C|31
*
4V90|1|BA|G|474
4V90|1|BA|U|475
4V90|1|BA|G|476
4V90|1|BA|A|477
4V90|1|BA|A|478
4V90|1|BA|A|479
4V90|1|BA|A|480
4V90|1|BA|G|481
4V90|1|BA|A|482
4V90|1|BA|A|483
4V90|1|BA|C|484
*
4V90|1|BA|G|496
4V90|1|BA|A|497
4V90|1|BA|G|498
4V90|1|BA|U|499
4V90|1|BA|G|500
4V90|1|BA|A|501
4V90|1|BA|A|502
4V90|1|BA|A|503
4V90|1|BA|U|504
4V90|1|BA|A|505
4V90|1|BA|G|506
4V90|1|BA|A|507
4V90|1|BA|G|508
4V90|1|BA|C|509
4V90|1|BA|C|510

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BU

50S RIBOSOMAL PROTEIN L20

Chain BW

50S RIBOSOMAL PROTEIN L22

Chain BY

50S RIBOSOMAL PROTEIN L24