J3_4V91_003

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUAG*CGUAG*UCGAAU

Length

15 nucleotides

Bulged bases

4V91|1|1|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V91_003 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1145

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V91|1|1|A|828
4V91|1|1|U|829
4V91|1|1|A|830
4V91|1|1|G|831
*
4V91|1|1|C|863
4V91|1|1|G|864
4V91|1|1|U|865
4V91|1|1|A|866
4V91|1|1|G|867
*
4V91|1|1|U|892
4V91|1|1|C|893
4V91|1|1|G|894
4V91|1|1|A|895
4V91|1|1|A|896
4V91|1|1|U|897

Current chains

Chain 1

25S RRNA

Nearby chains

Chain A

UL2

Chain R

EL19

Chain g

EL34