J3_4V91_015
3D structure
- PDB id
- 4V91 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 4V91|1|1|A|398, 4V91|1|1|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V91_015 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0901
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V91|1|1|A|369
4V91|1|1|U|370
4V91|1|1|G|371
4V91|1|1|A|372
4V91|1|1|A|373
4V91|1|1|A|374
4V91|1|1|A|375
4V91|1|1|G|376
4V91|1|1|A|377
4V91|1|1|A|378
4V91|1|1|C|379
*
4V91|1|1|G|390
4V91|1|1|A|391
4V91|1|1|G|392
4V91|1|1|U|393
4V91|1|1|G|394
4V91|1|1|A|395
4V91|1|1|A|396
4V91|1|1|A|397
4V91|1|1|A|398
4V91|1|1|A|399
4V91|1|1|G|400
4V91|1|1|U|401
4V91|1|1|A|402
4V91|1|1|C|403
4V91|1|1|G|404
*
4V91|1|4|C|19
4V91|1|4|U|20
Current chains
- Chain 1
- 25S RRNA
- Chain 4
- 5.8S RRNA
Nearby chains
- Chain C
- UL4
- Chain P
- UL22
- Chain Y
- UL24
- Chain l
- EL39
Coloring options: