J3_4V91_016

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UC*GAGGACUGCG*CAAGGA

Length

18 nucleotides

Bulged bases

4V91|1|1|A|607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V91_016 not in the Motif Atlas

Homologous match to J3_8P9A_048

Geometric discrepancy: 0.1028

The information below is about J3_8P9A_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83726.1

Basepair signature

cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V91|1|1|U|502
4V91|1|1|C|503
*
4V91|1|1|G|588
4V91|1|1|A|589
4V91|1|1|G|590
4V91|1|1|G|591
4V91|1|1|A|592
4V91|1|1|C|593
4V91|1|1|U|594
4V91|1|1|G|595
4V91|1|1|C|596
4V91|1|1|G|597
*
4V91|1|1|C|606
4V91|1|1|A|607
4V91|1|1|A|608
4V91|1|1|G|609
4V91|1|1|G|610
4V91|1|1|A|611

Current chains

Chain 1

25S RRNA

Nearby chains

Chain C

UL4

Chain E

EL6

Chain F

UL30

Chain e

EL32