3D structure

PDB id
4V91 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UC*GAGGACUGCG*CAAGGA
Length
18 nucleotides
Bulged bases
4V91|1|1|A|607
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V91_016 not in the Motif Atlas
Homologous match to J3_8P9A_048
Geometric discrepancy: 0.1028
The information below is about J3_8P9A_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83726.1
Basepair signature
cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

4V91|1|1|U|502
4V91|1|1|C|503
*
4V91|1|1|G|588
4V91|1|1|A|589
4V91|1|1|G|590
4V91|1|1|G|591
4V91|1|1|A|592
4V91|1|1|C|593
4V91|1|1|U|594
4V91|1|1|G|595
4V91|1|1|C|596
4V91|1|1|G|597
*
4V91|1|1|C|606
4V91|1|1|A|607
4V91|1|1|A|608
4V91|1|1|G|609
4V91|1|1|G|610
4V91|1|1|A|611

Current chains

Chain 1
25S RRNA

Nearby chains

Chain C
UL4
Chain E
EL6
Chain F
UL30
Chain e
EL32

Coloring options:


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