J3_4V91_023

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GCCUAUCGAUCC*GGUGCC

Length

21 nucleotides

Bulged bases

4V91|1|1|C|2760, 4V91|1|1|C|2797

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V91_023 not in the Motif Atlas

Homologous match to J3_8C3A_056

Geometric discrepancy: 0.087

The information below is about J3_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_27903.1

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-tHW-tHW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V91|1|1|G|2651
4V91|1|1|U|2652
4V91|1|1|C|2653
*
4V91|1|1|G|2754
4V91|1|1|C|2755
4V91|1|1|C|2756
4V91|1|1|U|2757
4V91|1|1|A|2758
4V91|1|1|U|2759
4V91|1|1|C|2760
4V91|1|1|G|2761
4V91|1|1|A|2762
4V91|1|1|U|2763
4V91|1|1|C|2764
4V91|1|1|C|2765
*
4V91|1|1|G|2793
4V91|1|1|G|2794
4V91|1|1|U|2795
4V91|1|1|G|2796
4V91|1|1|C|2797
4V91|1|1|C|2798

Current chains

Chain 1

25S RRNA

Nearby chains

Chain Q

EL18

Chain T

EL21

Chain a

UL15

Chain o

EL42