J3_4V91_027

3D structure

PDB id

4V91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V91_027 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.2332

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

4V91|1|1|G|1230
4V91|1|1|A|1231
4V91|1|1|C|1232
*
4V91|1|1|G|1256
4V91|1|1|C|1257
4V91|1|1|U|1258
4V91|1|1|A|1259
4V91|1|1|A|1260
4V91|1|1|G|1261
4V91|1|1|G|1262
*
4V91|1|1|C|1277
4V91|1|1|A|1278
4V91|1|1|C|1279

Current chains

Chain 1

25S RRNA

Nearby chains