J3_4V92_018
3D structure
- PDB id
- 4V92 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 4V92|1|A2|U|1473, 4V92|1|A2|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V92_018 not in the Motif Atlas
- Homologous match to J3_8P9A_084
- Geometric discrepancy: 0.303
- The information below is about J3_8P9A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.6
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V92|1|A2|C|1470
4V92|1|A2|A|1471
4V92|1|A2|C|1472
4V92|1|A2|U|1473
4V92|1|A2|G|1474
*
4V92|1|A2|C|1533
4V92|1|A2|G|1534
4V92|1|A2|U|1535
4V92|1|A2|G|1536
4V92|1|A2|C|1537
4V92|1|A2|U|1538
4V92|1|A2|G|1539
4V92|1|A2|G|1540
*
4V92|1|A2|C|1571
4V92|1|A2|G|1572
4V92|1|A2|A|1573
4V92|1|A2|G|1574
Current chains
- Chain A2
- 18S RRNA
Nearby chains
- Chain BF
- US7
- Chain BS
- US13
- Chain BZ
- ES25
Coloring options: