3D structure

PDB id
4V92 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CACUG*CGUGCUGG*CGAG
Length
17 nucleotides
Bulged bases
4V92|1|A2|U|1473, 4V92|1|A2|G|1539
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4V92_018 not in the Motif Atlas
Homologous match to J3_8P9A_084
Geometric discrepancy: 0.303
The information below is about J3_8P9A_084
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

4V92|1|A2|C|1470
4V92|1|A2|A|1471
4V92|1|A2|C|1472
4V92|1|A2|U|1473
4V92|1|A2|G|1474
*
4V92|1|A2|C|1533
4V92|1|A2|G|1534
4V92|1|A2|U|1535
4V92|1|A2|G|1536
4V92|1|A2|C|1537
4V92|1|A2|U|1538
4V92|1|A2|G|1539
4V92|1|A2|G|1540
*
4V92|1|A2|C|1571
4V92|1|A2|G|1572
4V92|1|A2|A|1573
4V92|1|A2|G|1574

Current chains

Chain A2
18S RRNA

Nearby chains

Chain BF
US7
Chain BS
US13
Chain BZ
ES25

Coloring options:


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