J3_4V97_005

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V97_005 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1705

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V97|1|AA|C|990
4V97|1|AA|U|991
4V97|1|AA|U|992
4V97|1|AA|G|993
4V97|1|AA|A|994
4V97|1|AA|C|995
4V97|1|AA|A|996
4V97|1|AA|U|997
*
4V97|1|AA|A|1044
4V97|1|AA|C|1045
4V97|1|AA|A|1046
4V97|1|AA|G|1047
*
4V97|1|AA|C|1210
4V97|1|AA|U|1211
4V97|1|AA|U|1212
4V97|1|AA|A|1213
4V97|1|AA|C|1214
4V97|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14 type Z

Chain DA

Large subunit ribosomal RNA; LSU rRNA