J3_4V9A_018

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAC*GGUAAG*CGAGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9A_018 not in the Motif Atlas

Homologous match to J3_7A0S_012

Geometric discrepancy: 0.2493

The information below is about J3_7A0S_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20574.1

Basepair signature

cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW

Number of instances in this motif group

1

Unit IDs

4V9A|1|BA|C|2789
4V9A|1|BA|A|2790
4V9A|1|BA|C|2791
*
4V9A|1|BA|G|2805
4V9A|1|BA|G|2807
4V9A|1|BA|U|2808
4V9A|1|BA|A|2809
4V9A|1|BA|A|2810
4V9A|1|BA|G|2811
*
4V9A|1|BA|C|2889
4V9A|1|BA|G|2891
4V9A|1|BA|A|2892
4V9A|1|BA|G|2893
4V9A|1|BA|G|2894

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3