J3_4V9A_043

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

4V9A|1|BA|U|504, 4V9A|1|BA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9A_043 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0917

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4V9A|1|BA|G|30
4V9A|1|BA|C|31
*
4V9A|1|BA|G|474
4V9A|1|BA|U|475
4V9A|1|BA|G|476
4V9A|1|BA|A|477
4V9A|1|BA|A|478
4V9A|1|BA|A|479
4V9A|1|BA|A|480
4V9A|1|BA|G|481
4V9A|1|BA|A|482
4V9A|1|BA|A|483
4V9A|1|BA|C|484
*
4V9A|1|BA|G|496
4V9A|1|BA|A|497
4V9A|1|BA|G|498
4V9A|1|BA|U|499
4V9A|1|BA|G|500
4V9A|1|BA|A|501
4V9A|1|BA|A|502
4V9A|1|BA|A|503
4V9A|1|BA|U|504
4V9A|1|BA|A|505
4V9A|1|BA|G|506
4V9A|1|BA|A|507
4V9A|1|BA|G|508
4V9A|1|BA|C|509
4V9A|1|BA|C|510

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L20

Chain BS

50S ribosomal protein L22

Chain BU

50S ribosomal protein L24